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Course Outline

Introduction to the Python programming language

  • Why choose Python?
  • Utilizing Python for biological data handling
  • Navigating the iPython shell
  • Writing your first program
  • Developing Python scripts
  • Importing modules

Working with protein and RNA/DNA sequences

  • Identifying motifs
  • In silico transcription and translation
  • Managing sequence alignments

Parsing data in various biological formats

  • Processing FASTA files
  • Converting data formats

Executing biological analyses

  • Using BLAST
  • Interacting with biological web services

Analyzing biological 3D structures with Python

Performing statistical analysis using Python

Data visualization

  • Generating bar and scatter plots
  • Computing the Area Under Curve (AUC)

Manipulating .xls and .csv files

  • Importing data to and exporting from MS Excel / OpenOffice Calc
  • Creating .xls and .csv files

Building an automated data processing pipeline with Python

Requirements

Foundational knowledge of protein, RNA, and DNA sequences.

 28 Hours

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