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Course Outline
Introduction to the Python programming language
- Why choose Python?
- Utilizing Python for biological data handling
- Navigating the iPython shell
- Writing your first program
- Developing Python scripts
- Importing modules
Working with protein and RNA/DNA sequences
- Identifying motifs
- In silico transcription and translation
- Managing sequence alignments
Parsing data in various biological formats
- Processing FASTA files
- Converting data formats
Executing biological analyses
- Using BLAST
- Interacting with biological web services
Analyzing biological 3D structures with Python
Performing statistical analysis using Python
Data visualization
- Generating bar and scatter plots
- Computing the Area Under Curve (AUC)
Manipulating .xls and .csv files
- Importing data to and exporting from MS Excel / OpenOffice Calc
- Creating .xls and .csv files
Building an automated data processing pipeline with Python
Requirements
Foundational knowledge of protein, RNA, and DNA sequences.
28 Hours
Testimonials (1)
The accesibilit of the trainer and the ability to communicate very effective,